Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028971.1 | |
| CAI8028972.1 | |
| CAI8028973.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI8028975.1 | |
| CAI8028974.1 | |
| CAI8028976.1 | |
| CAI8028977.1 | |
| CAI8028978.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8028979.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8028980.1 | |
| CAI8028981.1 | |
| CAI8028982.1 | |
| CAI8028983.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8028984.1 | |
| CAI8028985.1 | D-THREO-ALDOSE 1-DEHYDROGENASE |
| CAI8028986.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8028987.1 | 5-OXOPROLINASE RELATED |
| CAI8028989.1 | ZYX102 PROTEIN |
| CAI8028988.1 | |
| CAI8028990.1 | |
| CAI8028991.1 | |
| CAI8028992.1 | |
| CAI8028995.1 | VINCULIN |
| CAI8028994.1 | VINCULIN |
| CAI8028993.1 | VINCULIN |
| CAI8028996.1 | VINCULIN |
| CAI8028998.1 | VINCULIN |
| CAI8028997.1 | VINCULIN |
| CAI8028999.1 | VINCULIN |
| CAI8029001.1 | VINCULIN |
| CAI8029000.1 | VINCULIN |
| CAI8029002.1 | |
| CAI8029003.1 | RIBOSOMAL PROTEIN L15 |
| CAI8029004.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8029005.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8029006.1 | |
| CAI8029007.1 | GLYCOGENIN SUBFAMILY MEMBER |
| CAI8029008.1 | RAB11-RELATED |
| CAI8029009.1 | CONTACTIN 5 |
| CAI8029010.1 | CONTACTIN 5 |
| CAI8029011.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8029012.1 | |
| CAI8029013.1 | |
| CAI8029014.1 | |
| CAI8029015.1 | |
| CAI8029016.1 | FERREDOXIN-RELATED |
| CAI8029017.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8029018.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8029019.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8029020.1 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE |
