Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029071.1 | THIOL:DISULFIDE INTERCHANGE PROTEIN DSBE |
| CAI8029072.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI8029073.1 | ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 |
| CAI8029074.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 |
| CAI8029078.1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| CAI8029077.1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| CAI8029076.1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| CAI8029075.1 | |
| CAI8029081.1 | |
| CAI8029079.1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| CAI8029080.1 | |
| CAI8029082.1 | |
| CAI8029083.1 | |
| CAI8029084.1 | |
| CAI8029085.1 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| CAI8029087.1 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| CAI8029086.1 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| CAI8029088.1 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| CAI8029089.1 | ACYL COENZYME A THIOESTER HYDROLASE |
| CAI8029090.1 | ACYL COENZYME A THIOESTER HYDROLASE |
| CAI8029091.1 | |
| CAI8029092.1 | |
| CAI8029093.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8029094.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 43 |
| CAI8029095.1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| CAI8029098.1 | MRN COMPLEX-INTERACTING PROTEIN |
| CAI8029099.1 | MRN COMPLEX-INTERACTING PROTEIN |
| CAI8029097.1 | |
| CAI8029096.1 | |
| CAI8029100.1 | |
| CAI8029101.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER |
| CAI8029104.1 | EXOSOME COMPLEX COMPONENT |
| CAI8029102.1 | |
| CAI8029103.1 | EXOSOME COMPLEX COMPONENT |
| CAI8029105.1 | |
| CAI8029106.1 | |
| CAI8029107.1 | |
| CAI8029108.1 | |
| CAI8029109.1 | PROGRAMMED CELL DEATH PROTEIN 2-LIKE |
| CAI8029110.1 | PROGRAMMED CELL DEATH PROTEIN 2-LIKE |
| CAI8029111.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8029112.1 | TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE |
| CAI8029113.1 | TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE |
| CAI8029119.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8029118.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8029117.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8029116.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8029115.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8029114.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8029120.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
