Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028871.1 | CYSTEINE DESULFURASE |
| CAI8028872.1 | CYSTEINE DESULFURASE |
| CAI8028875.1 | PHOSPHOGLYCERATE KINASE |
| CAI8028874.1 | PHOSPHOGLYCERATE KINASE |
| CAI8028873.1 | PHOSPHOGLYCERATE KINASE |
| CAI8028876.1 | OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED |
| CAI8028877.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8028878.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8028879.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8028880.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8028881.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8028882.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8028883.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI8028884.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8028885.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8028886.1 | - |
| CAI8028887.1 | NAD(P)H-HYDRATE EPIMERASE |
| CAI8028888.1 | ENOLASE |
| CAI8028889.1 | PROTEIN MEMO1 |
| CAI8028890.1 | |
| CAI8028892.1 | |
| CAI8028891.1 | |
| CAI8028893.1 | |
| CAI8028894.1 | |
| CAI8028895.1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
| CAI8028896.1 | GLUTAMINE-TRNA LIGASE |
| CAI8028897.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8028898.1 | FERREDOXIN-RELATED |
| CAI8028899.1 | RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN |
| CAI8028900.1 | ARGININOSUCCINATE SYNTHASE |
| CAI8028901.1 | |
| CAI8028902.1 | FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE |
| CAI8028903.1 | TRANSLATION FACTOR |
| CAI8028904.1 | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER |
| CAI8028905.1 | |
| CAI8028906.1 | |
| CAI8028907.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8028908.1 | OBG GTPASE FAMILY |
| CAI8028909.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8028910.1 | RIBOSOME BIOGENESIS PROTEIN NOP10 |
| CAI8028911.1 | DUDULIN-RELATED |
| CAI8028912.1 | |
| CAI8028913.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8028914.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8028915.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8028917.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8028916.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8028918.1 | |
| CAI8028919.1 | |
| CAI8028920.1 |
