Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028571.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI8028573.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8028572.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8028574.1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| CAI8028575.1 | OXALOACETATE DECARBOXYLASE ALPHA CHAIN |
| CAI8028576.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI8028577.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI8028578.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8028579.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8028580.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| CAI8028581.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| CAI8028582.1 | |
| CAI8028583.1 | |
| CAI8028584.1 | TYPE III PANTOTHENATE KINASE |
| CAI8028585.1 | |
| CAI8028586.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8028587.1 | |
| CAI8028588.1 | ANAEROBIC GLYCEROL-3-PHOSPHATE DEHYDROGENASE SUBUNIT B |
| CAI8028589.1 | |
| CAI8028591.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8028590.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8028592.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8028593.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8028594.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI8028595.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8028596.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8028597.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8028598.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8028599.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8028600.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8028601.1 | RHOMBOID PROTEASE |
| CAI8028602.1 | |
| CAI8028604.1 | |
| CAI8028603.1 | ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN |
| CAI8028605.1 | |
| CAI8028608.1 | AP1 GAMMA SUBUNIT BINDING PROTEIN 1 |
| CAI8028606.1 | ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN |
| CAI8028607.1 | AP1 GAMMA SUBUNIT BINDING PROTEIN 1 |
| CAI8028609.1 | |
| CAI8028614.1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| CAI8028613.1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| CAI8028612.1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| CAI8028611.1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| CAI8028610.1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| CAI8028616.1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| CAI8028615.1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| CAI8028617.1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| CAI8028618.1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| CAI8028619.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2A |
| CAI8028620.1 |
