Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028271.1 | |
| CAI8028272.1 | |
| CAI8028273.1 | TENASCIN |
| CAI8028274.1 | |
| CAI8028275.1 | ENDONUCLEASE-RELATED |
| CAI8028276.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8028278.1 | UNCHARACTERIZED |
| CAI8028277.1 | UNCHARACTERIZED |
| CAI8028280.1 | UNCHARACTERIZED |
| CAI8028281.1 | UNCHARACTERIZED |
| CAI8028279.1 | UNCHARACTERIZED |
| CAI8028283.1 | UNCHARACTERIZED |
| CAI8028282.1 | UNCHARACTERIZED |
| CAI8028287.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8028286.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8028284.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8028285.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8028288.1 | |
| CAI8028290.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8028289.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8028291.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8028293.1 | UNCHARACTERIZED |
| CAI8028292.1 | UNCHARACTERIZED |
| CAI8028295.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8028294.1 | |
| CAI8028296.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8028297.1 | |
| CAI8028298.1 | |
| CAI8028299.1 | |
| CAI8028300.1 | |
| CAI8028301.1 | |
| CAI8028302.1 | |
| CAI8028303.1 | IKB KINASE |
| CAI8028304.1 | - |
| CAI8028305.1 | MUCIN 4-RELATED |
| CAI8028307.1 | EPSIN/ENT-RELATED |
| CAI8028306.1 | |
| CAI8028308.1 | FAM13 |
| CAI8028309.1 | FAM13 |
| CAI8028312.1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
| CAI8028311.1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
| CAI8028310.1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
| CAI8028313.1 | NEGATIVE ELONGATION FACTOR D |
| CAI8028314.1 | NEGATIVE ELONGATION FACTOR D |
| CAI8028315.1 | NEGATIVE ELONGATION FACTOR D |
| CAI8028317.1 | NEGATIVE ELONGATION FACTOR D |
| CAI8028316.1 | NEGATIVE ELONGATION FACTOR D |
| CAI8028318.1 | NEGATIVE ELONGATION FACTOR D |
| CAI8028319.1 | |
| CAI8028320.1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 |
