Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028321.1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 |
| CAI8028322.1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 |
| CAI8028323.1 | |
| CAI8028325.1 | |
| CAI8028324.1 | |
| CAI8028326.1 | BONUS, ISOFORM C-RELATED |
| CAI8028327.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8028328.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8028333.1 | SCD6 PROTEIN-RELATED |
| CAI8028334.1 | SCD6 PROTEIN-RELATED |
| CAI8028332.1 | SCD6 PROTEIN-RELATED |
| CAI8028331.1 | SCD6 PROTEIN-RELATED |
| CAI8028329.1 | SCD6 PROTEIN-RELATED |
| CAI8028330.1 | SCD6 PROTEIN-RELATED |
| CAI8028335.1 | NUCLEAR TRANSPORT FACTOR 2 |
| CAI8028338.1 | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED |
| CAI8028337.1 | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED |
| CAI8028336.1 | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED |
| CAI8028339.1 | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED |
| CAI8028340.1 | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED |
| CAI8028341.1 | |
| CAI8028343.1 | |
| CAI8028342.1 | |
| CAI8028344.1 | MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 |
| CAI8028345.1 | |
| CAI8028346.1 | PROTEIN SIDEKICK |
| CAI8028347.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8028348.1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| CAI8028349.1 | |
| CAI8028350.1 | |
| CAI8028351.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI8028352.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI8028353.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI8028354.1 | FLAGELLAR MOTOR SWITCH PROTEIN FLIG |
| CAI8028356.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8028355.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8028357.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8028358.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8028359.1 | |
| CAI8028360.1 | |
| CAI8028361.1 | WD REPEAT-CONTAINING PROTEIN 36 |
| CAI8028362.1 | WD REPEAT-CONTAINING PROTEIN 36 |
| CAI8028363.1 | WD REPEAT-CONTAINING PROTEIN 36 |
| CAI8028364.1 | |
| CAI8028365.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8028366.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8028367.1 | |
| CAI8028372.1 | UNCHARACTERIZED |
| CAI8028371.1 | UNCHARACTERIZED |
| CAI8028370.1 | UNCHARACTERIZED |
