Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028221.1 | FO SYNTHASE (COFH) |
| CAI8028222.1 | FO SYNTHASE (COFH) |
| CAI8028223.1 | FO SYNTHASE (COFH) |
| CAI8028224.1 | 2-PHOSPHO-L-LACTATE TRANSFERASE |
| CAI8028225.1 | 2-PHOSPHO-L-LACTATE GUANYLYLTRANSFERASE |
| CAI8028226.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8028227.1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE |
| CAI8028228.1 | |
| CAI8028229.1 | FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE |
| CAI8028230.1 | AMINOTRANSFERASE |
| CAI8028236.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8028235.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8028233.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8028234.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8028232.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8028231.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8028237.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8028238.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8028239.1 | PEPTIDASE S12 |
| CAI8028240.1 | NIPSNAP-RELATED |
| CAI8028241.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8028242.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8028243.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8028244.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8028245.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8028246.1 | EXONUCLEASE |
| CAI8028247.1 | SPORULATION PROTEIN RELATED |
| CAI8028248.1 | RIBONUCLEASE J |
| CAI8028249.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI8028250.1 | |
| CAI8028252.1 | N UTILIZATION SUBSTANCE PROTEIN B-RELATED |
| CAI8028251.1 | N UTILIZATION SUBSTANCE PROTEIN B-RELATED |
| CAI8028253.1 | |
| CAI8028254.1 | MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL |
| CAI8028255.1 | |
| CAI8028256.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8028257.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8028258.1 | |
| CAI8028259.1 | |
| CAI8028260.1 | METALLOPROTEASE TLDD |
| CAI8028261.1 | MIGRATION AND INVASION-INHIBITORY PROTEIN |
| CAI8028263.1 | |
| CAI8028262.1 | |
| CAI8028264.1 | |
| CAI8028265.1 | |
| CAI8028266.1 | NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER |
| CAI8028268.1 | LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED |
| CAI8028267.1 | LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED |
| CAI8028269.1 | TENASCIN |
| CAI8028270.1 | TENASCIN |
