Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8027971.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8027972.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8027973.1 | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED |
| CAI8027974.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI8027975.1 | ARSENATE REDUCTASE |
| CAI8027976.1 | |
| CAI8027977.1 | TRANSAMIDASE |
| CAI8027978.1 | TRANSAMIDASE |
| CAI8027979.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8027980.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8027981.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8027982.1 | |
| CAI8027983.1 | HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR |
| CAI8027984.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8027985.1 | PROTEIN TOLB HOMOLOG |
| CAI8027986.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8027987.1 | NUDIX HYDROLASE RELATED |
| CAI8027989.1 | INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE |
| CAI8027988.1 | INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE |
| CAI8027990.1 | ANION EXCHANGE PROTEIN |
| CAI8027991.1 | |
| CAI8027992.1 | |
| CAI8027994.1 | |
| CAI8027993.1 | |
| CAI8027996.1 | NUCLEAR PROTEIN SKIP-RELATED |
| CAI8027995.1 | NUCLEAR PROTEIN SKIP-RELATED |
| CAI8027997.1 | NUCLEAR PROTEIN SKIP-RELATED |
| CAI8027998.1 | NUCLEAR PROTEIN SKIP-RELATED |
| CAI8027999.1 | |
| CAI8028000.1 | ABSCISSION/NOCUT CHECKPOINT REGULATOR |
| CAI8028001.1 | |
| CAI8028003.1 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| CAI8028004.1 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| CAI8028002.1 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| CAI8028005.1 | WD REPEAT PROTEIN |
| CAI8028007.1 | SETA BINDING PROTEIN 1 |
| CAI8028006.1 | SETA BINDING PROTEIN 1 |
| CAI8028008.1 | SETA BINDING PROTEIN 1 |
| CAI8028009.1 | SETA BINDING PROTEIN 1 |
| CAI8028011.1 | SETA BINDING PROTEIN 1 |
| CAI8028012.1 | SETA BINDING PROTEIN 1 |
| CAI8028010.1 | SETA BINDING PROTEIN 1 |
| CAI8028013.1 | SETA BINDING PROTEIN 1 |
| CAI8028014.1 | TGF-BETA FAMILY |
| CAI8028015.1 | TGF-BETA FAMILY |
| CAI8028016.1 | |
| CAI8028017.1 | |
| CAI8028018.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8028019.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI8028020.1 | ABC TRANSPORTER, MEMBRANE PROTEIN |
