Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028021.1 | LIPOPROTEIN-RELEASING SYSTEM ATP-BINDING PROTEIN LOLD |
| CAI8028022.1 | |
| CAI8028023.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8028024.1 | BAND 7 PROTEIN-RELATED |
| CAI8028025.1 | BLL2462 PROTEIN |
| CAI8028028.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8028027.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8028026.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8028029.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8028030.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8028031.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8028032.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8028033.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8028034.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8028035.1 | LYSYL-TRNA SYNTHETASE |
| CAI8028036.1 | LYSYL-TRNA SYNTHETASE |
| CAI8028037.1 | LYSYL-TRNA SYNTHETASE |
| CAI8028038.1 | LYSYL-TRNA SYNTHETASE |
| CAI8028039.1 | LYSYL-TRNA SYNTHETASE |
| CAI8028040.1 | LYSYL-TRNA SYNTHETASE |
| CAI8028041.1 | LYSYL-TRNA SYNTHETASE |
| CAI8028042.1 | LYSYL-TRNA SYNTHETASE |
| CAI8028043.1 | LIPOPROTEIN-RELEASING SYSTEM TRANSMEMBRANE PROTEIN LOLE |
| CAI8028044.1 | UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASE |
| CAI8028045.1 | CHLOROPHYLL SYNTHASE |
| CAI8028046.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8028047.1 | GRPE PROTEIN |
| CAI8028048.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI8028049.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE |
| CAI8028050.1 | LIPOPROTEIN-RELATED |
| CAI8028053.1 | |
| CAI8028052.1 | |
| CAI8028051.1 | |
| CAI8028055.1 | |
| CAI8028054.1 | |
| CAI8028056.1 | |
| CAI8028060.1 | |
| CAI8028058.1 | |
| CAI8028057.1 | |
| CAI8028059.1 | |
| CAI8028061.1 | |
| CAI8028062.1 | |
| CAI8028067.1 | |
| CAI8028065.1 | |
| CAI8028066.1 | |
| CAI8028064.1 | |
| CAI8028063.1 | |
| CAI8028068.1 | |
| CAI8028069.1 | NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 |
| CAI8028072.1 | ARYLSULFATASE FAMILY MEMBER |
