Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028171.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
| CAI8028172.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
| CAI8028173.1 | |
| CAI8028174.1 | ATP SYNTHASE SUBUNIT A, CHLOROPLASTIC |
| CAI8028175.1 | ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL |
| CAI8028176.1 | ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC |
| CAI8028177.1 | ATP SYNTHASE DELTA CHAIN |
| CAI8028179.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8028180.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8028178.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8028182.1 | ATP SYNTHASE |
| CAI8028186.1 | ATP SYNTHASE |
| CAI8028184.1 | ATP SYNTHASE |
| CAI8028183.1 | ATP SYNTHASE |
| CAI8028181.1 | ATP SYNTHASE |
| CAI8028187.1 | ATP SYNTHASE |
| CAI8028185.1 | ATP SYNTHASE |
| CAI8028188.1 | ATP SYNTHASE |
| CAI8028189.1 | ATP SYNTHASE |
| CAI8028190.1 | ATP SYNTHASE DELTA/EPSILON CHAIN |
| CAI8028191.1 | REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX |
| CAI8028192.1 | HYPOTHETICAL CYTOSOLIC PROTEIN |
| CAI8028193.1 | |
| CAI8028194.1 | DIAMINOPIMELATE DECARBOXYLASE |
| CAI8028195.1 | COLLAGEN |
| CAI8028196.1 | |
| CAI8028197.1 | |
| CAI8028198.1 | 5'-NUCLEOTIDASE SURE |
| CAI8028199.1 | |
| CAI8028200.1 | |
| CAI8028201.1 | MOLYBDENUM COFACTOR BIOSYNTHESIS |
| CAI8028202.1 | HISTIDINE TRIAD HIT PROTEIN |
| CAI8028203.1 | UNCHARACTERIZED |
| CAI8028204.1 | HYDROLASE ALPHA/BETA FOLD FAMILY |
| CAI8028205.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8028206.1 | PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED |
| CAI8028207.1 | AMINOTRANSFERASE |
| CAI8028208.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8028209.1 | MOLYBDENUM COFACTOR CYTIDYLYLTRANSFERASE |
| CAI8028210.1 | ALDEHYDE OXIDOREDUCTASE MOLYBDENUM COFACTOR ASSEMBLY PROTEIN |
| CAI8028211.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8028212.1 | MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED |
| CAI8028213.1 | |
| CAI8028214.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8028215.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8028216.1 | PAREP8-RELATED |
| CAI8028217.1 | |
| CAI8028218.1 | |
| CAI8028219.1 | - |
| CAI8028220.1 | - |
