Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028121.1 | PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE |
| CAI8028126.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8028125.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8028124.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8028123.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8028122.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8028127.1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| CAI8028128.1 | TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE |
| CAI8028129.1 | |
| CAI8028130.1 | ENGULFMENT AND CELL MOTILITY |
| CAI8028131.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8028132.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8028133.1 | |
| CAI8028134.1 | CADHERIN-87A |
| CAI8028135.1 | PHD/F-BOX CONTAINING PROTEIN |
| CAI8028136.1 | |
| CAI8028137.1 | |
| CAI8028141.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028140.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028138.1 | |
| CAI8028139.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028142.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028143.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028144.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028145.1 | |
| CAI8028146.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8028147.1 | ARYLACETAMIDE DEACETYLASE |
| CAI8028148.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8028149.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8028150.1 | TRANS-ACONITATE 2-METHYLTRANSFERASE-RELATED |
| CAI8028151.1 | CELL SURFACE PROTEIN |
| CAI8028152.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8028153.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8028154.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8028155.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8028156.1 | NUDIX HYDROLASE RELATED |
| CAI8028157.1 | |
| CAI8028158.1 | |
| CAI8028159.1 | |
| CAI8028160.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8028161.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8028162.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8028163.1 | |
| CAI8028164.1 | XANTHINE DEHYDROGENASE |
| CAI8028165.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8028166.1 | |
| CAI8028167.1 | |
| CAI8028168.1 | |
| CAI8028169.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8028170.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
