Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8027921.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8027922.1 | |
| CAI8027923.1 | |
| CAI8027924.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8027925.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8027926.1 | |
| CAI8027927.1 | |
| CAI8027928.1 | |
| CAI8027930.1 | |
| CAI8027929.1 | |
| CAI8027931.1 | |
| CAI8027933.1 | |
| CAI8027932.1 | |
| CAI8027934.1 | |
| CAI8027935.1 | |
| CAI8027936.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8027937.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8027938.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8027939.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8027940.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8027941.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8027942.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8027943.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8027944.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8027945.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI8027946.1 | MAJOR FACILITATOR SUPERFAMILY MULTIDRUG TRANSPORTER MFSC |
| CAI8027947.1 | CYTOSINE DEAMINASE FAMILY MEMBER |
| CAI8027948.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8027949.1 | |
| CAI8027950.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8027951.1 | ACETOLACTATE SYNTHASE SMALL SUBUNIT |
| CAI8027952.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8027953.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8027954.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8027955.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8027956.1 | ALPHA-D-GLUCOSE 1-PHOSPHATE PHOSPHATASE |
| CAI8027957.1 | MRR RESTRICTION SYSTEM PROTEIN |
| CAI8027958.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8027959.1 | HOMOACONITASE, MITOCHONDRIAL-RELATED |
| CAI8027960.1 | HOMOACONITASE, MITOCHONDRIAL-RELATED |
| CAI8027961.1 | |
| CAI8027962.1 | 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED |
| CAI8027963.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI8027964.1 | SPORULATION PROTEIN RELATED |
| CAI8027965.1 | |
| CAI8027966.1 | RIBONUCLEASE J |
| CAI8027967.1 | SLL0198 PROTEIN-RELATED |
| CAI8027968.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8027969.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8027970.1 | OXALOACETATE DECARBOXYLASE ALPHA CHAIN |
