Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8027623.1 | |
| CAI8027621.1 | VACUOLAR ATP SYNTHASE SUBUNIT S1 |
| CAI8027620.1 | VACUOLAR ATP SYNTHASE SUBUNIT S1 |
| CAI8027624.1 | |
| CAI8027625.1 | BASIGIN RELATED |
| CAI8027626.1 | BASIGIN RELATED |
| CAI8027627.1 | BASIGIN RELATED |
| CAI8027630.1 | BONE MORPHOGENETIC PROTEIN INHIBITOR, NOGGIN |
| CAI8027629.1 | BONE MORPHOGENETIC PROTEIN INHIBITOR, NOGGIN |
| CAI8027628.1 | |
| CAI8027631.1 | BONE MORPHOGENETIC PROTEIN INHIBITOR, NOGGIN |
| CAI8027633.1 | |
| CAI8027632.1 | |
| CAI8027634.1 | |
| CAI8027635.1 | |
| CAI8027637.1 | CADHERIN-87A |
| CAI8027638.1 | DESMOGLEIN FAMILY MEMBER |
| CAI8027636.1 | |
| CAI8027639.1 | DESMOGLEIN FAMILY MEMBER |
| CAI8027640.1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 9 |
| CAI8027641.1 | |
| CAI8027643.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8027642.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8027645.1 | |
| CAI8027646.1 | |
| CAI8027644.1 | |
| CAI8027647.1 | |
| CAI8027648.1 | COLLAGEN ALPHA |
| CAI8027649.1 | COLLAGEN ALPHA |
| CAI8027650.1 | COLLAGEN ALPHA |
| CAI8027651.1 | COLLAGEN ALPHA |
| CAI8027652.1 | UNCHARACTERIZED |
| CAI8027653.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8027654.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8027655.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8027656.1 | BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA |
| CAI8027657.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8027658.1 | AMINOMETHYLTRANSFERASE |
| CAI8027659.1 | AMINOMETHYLTRANSFERASE |
| CAI8027660.1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
| CAI8027661.1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
| CAI8027663.1 | UNCHARACTERIZED |
| CAI8027662.1 | |
| CAI8027664.1 | |
| CAI8027665.1 | |
| CAI8027666.1 | SHIPPO-1-RELATED |
| CAI8027670.1 | HSC70CB, ISOFORM G-RELATED |
| CAI8027669.1 | HSC70CB, ISOFORM G-RELATED |
| CAI8027668.1 | HSC70CB, ISOFORM G-RELATED |
| CAI8027667.1 | HSC70CB, ISOFORM G-RELATED |
