Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)
Geodia barretti Bowerbank, 1858
(Bowerbank et al., 1858 Cárdenas et al., 2013)the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters
Geodia barretti has been found at depths from 30 to 2000 m.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50 | 48.4 | 49.3 | 19.05 | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8027371.1 | |
| CAI8027372.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8027373.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8027374.1 | 23S RRNA METHYLTRANSFERASE |
| CAI8027375.1 | |
| CAI8027376.1 | D-THREO-ALDOSE 1-DEHYDROGENASE |
| CAI8027377.1 | NAD(P)H NITROREDUCTASE YDJA-RELATED |
| CAI8027378.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8027379.1 | |
| CAI8027380.1 | NITRILASE-RELATED |
| CAI8027382.1 | NITRILASE-RELATED |
| CAI8027381.1 | NITRILASE-RELATED |
| CAI8027383.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8027384.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8027385.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8027386.1 | |
| CAI8027387.1 | PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED |
| CAI8027388.1 | PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED |
| CAI8027389.1 | RNA HELICASE |
| CAI8027392.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 |
| CAI8027391.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 |
| CAI8027390.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 |
| CAI8027393.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 |
| CAI8027394.1 | |
| CAI8027395.1 | |
| CAI8027397.1 | |
| CAI8027396.1 | |
| CAI8027398.1 | |
| CAI8027400.1 | |
| CAI8027399.1 | |
| CAI8027401.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8027402.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8027403.1 | |
| CAI8027404.1 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED |
| CAI8027405.1 | |
| CAI8027406.1 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED |
| CAI8027407.1 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED |
| CAI8027408.1 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED |
| CAI8027409.1 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE |
| CAI8027410.1 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE |
| CAI8027411.1 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE |
| CAI8027412.1 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE |
| CAI8027414.1 | TENASCIN |
| CAI8027415.1 | |
| CAI8027413.1 | |
| CAI8027417.1 | XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED |
| CAI8027418.1 | |
| CAI8027416.1 | |
| CAI8027419.1 | LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE |
| CAI8027420.1 | LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE |
