About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original description (Bowerbank et al., 1858  Cárdenas et al., 2013)Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/locality

Geodia barretti has been found at depths from 30 to 2000 m.

Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8027470.1
CAI8027472.1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
CAI8027473.1
CAI8027474.1
CAI8027475.1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
CAI8027476.1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
CAI8027477.1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
CAI8027478.1COLLAGEN ALPHA
CAI8027483.1BETA-MANNOSIDASE
CAI8027482.1BETA-MANNOSIDASE
CAI8027481.1BETA-MANNOSIDASE
CAI8027480.1BETA-MANNOSIDASE
CAI8027479.1BETA-MANNOSIDASE
CAI8027484.1BETA-MANNOSIDASE
CAI8027487.1COLLAGEN ALPHA
CAI8027485.1COLLAGEN ALPHA
CAI8027488.1COLLAGEN ALPHA
CAI8027486.1COLLAGEN ALPHA
CAI8027489.1
CAI8027490.1
CAI8027491.1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
CAI8027494.1RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
CAI8027495.1RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
CAI8027493.1RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
CAI8027492.1RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
CAI8027496.1RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
CAI8027497.1RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
CAI8027498.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12
CAI8027499.1
CAI8027500.1
CAI8027501.1
CAI8027502.1
CAI8027503.1
CAI8027504.1WD40 REPEAT PROTEIN
CAI8027507.1
CAI8027506.1
CAI8027505.1
CAI8027508.1
CAI8027509.1BASIGIN RELATED
CAI8027510.1BASIGIN RELATED
CAI8027512.1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
CAI8027511.1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
CAI8027513.1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
CAI8027515.1RAN BINDING PROTEIN 9-RELATED
CAI8027516.1RAN BINDING PROTEIN 9-RELATED
CAI8027514.1RAN BINDING PROTEIN 9-RELATED
CAI8027517.1RAN BINDING PROTEIN 9-RELATED
CAI8027518.1
CAI8027521.1
CAI8027520.1
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