Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028422.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8028421.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8028423.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8028424.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8028425.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8028426.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8028427.1 | 2-OXOGLUTARATE OXIDOREDUCTASE SUBUNIT KORB-RELATED |
| CAI8028429.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| CAI8028428.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| CAI8028431.1 | M7GPPPN-MRNA HYDROLASE |
| CAI8028430.1 | |
| CAI8028432.1 | ALCOHOL DEHYDROGENASE |
| CAI8028433.1 | ALCOHOL DEHYDROGENASE |
| CAI8028434.1 | ALCOHOL DEHYDROGENASE |
| CAI8028435.1 | S-FORMYLGLUTATHIONE HYDROLASE |
| CAI8028436.1 | |
| CAI8028437.1 | RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN |
| CAI8028438.1 | |
| CAI8028439.1 | UNCHARACTERIZED PROTEIN YQGE |
| CAI8028440.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8028442.1 | |
| CAI8028441.1 | |
| CAI8028443.1 | |
| CAI8028444.1 | |
| CAI8028445.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8028446.1 | SUPERKILLER 3 PROTEIN-RELATED |
| CAI8028447.1 | GLUTATHIONE S-TRANSFERASE |
| CAI8028448.1 | |
| CAI8028449.1 | |
| CAI8028450.1 | VITELLOGENIN-RELATED |
| CAI8028451.1 | GLUTATHIONE S-TRANSFERASE |
| CAI8028452.1 | MOLYBDOPTERIN SYNTHASE RELATED |
| CAI8028453.1 | E3 UBIQUITIN-PROTEIN LIGASE PRAJA |
| CAI8028454.1 | E3 UBIQUITIN-PROTEIN LIGASE PRAJA |
| CAI8028455.1 | E3 UBIQUITIN-PROTEIN LIGASE PRAJA |
| CAI8028456.1 | E3 UBIQUITIN-PROTEIN LIGASE PRAJA |
| CAI8028459.1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| CAI8028458.1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| CAI8028457.1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| CAI8028460.1 | |
| CAI8028461.1 | |
| CAI8028462.1 | |
| CAI8028465.1 | |
| CAI8028464.1 | |
| CAI8028466.1 | |
| CAI8028467.1 | |
| CAI8028463.1 | |
| CAI8028468.1 | |
| CAI8028470.1 | |
| CAI8028469.1 |
