Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028523.1 | |
| CAI8028522.1 | PROTEIN KINASE C, MU |
| CAI8028521.1 | PROTEIN KINASE C, MU |
| CAI8028526.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8028525.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8028524.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8028530.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8028529.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8028528.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8028527.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8028531.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8028532.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8028533.1 | HORMA DOMAIN-CONTAINING PROTEIN 1 |
| CAI8028534.1 | |
| CAI8028535.1 | |
| CAI8028536.1 | |
| CAI8028538.1 | SUPEROXIDE DISMUTASE CU-ZN -RELATED |
| CAI8028537.1 | SUPEROXIDE DISMUTASE CU-ZN -RELATED |
| CAI8028539.1 | |
| CAI8028540.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN 63 |
| CAI8028541.1 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER |
| CAI8028543.1 | TETRASPANIN |
| CAI8028542.1 | TETRASPANIN |
| CAI8028544.1 | TETRASPANIN |
| CAI8028545.1 | TETRASPANIN |
| CAI8028546.1 | TETRASPANIN |
| CAI8028547.1 | |
| CAI8028548.1 | |
| CAI8028550.1 | |
| CAI8028549.1 | |
| CAI8028551.1 | |
| CAI8028552.1 | IMPORTIN-7, 8, 11 |
| CAI8028553.1 | IMPORTIN-7, 8, 11 |
| CAI8028554.1 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE |
| CAI8028555.1 | |
| CAI8028556.1 | |
| CAI8028557.1 | |
| CAI8028561.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8028562.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8028560.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8028559.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8028558.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8028563.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8028564.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8028565.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8028567.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028568.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028566.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028569.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8028570.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
