Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028471.1 | |
| CAI8028472.1 | |
| CAI8028473.1 | |
| CAI8028474.1 | TRANSFERASE, PUTATIVE-RELATED |
| CAI8028475.1 | |
| CAI8028476.1 | |
| CAI8028477.1 | |
| CAI8028478.1 | |
| CAI8028479.1 | |
| CAI8028480.1 | |
| CAI8028481.1 | |
| CAI8028482.1 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| CAI8028483.1 | |
| CAI8028484.1 | |
| CAI8028486.1 | |
| CAI8028485.1 | |
| CAI8028489.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8028488.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8028487.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8028490.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8028493.1 | TATD FAMILY DEOXYRIBONUCLEASE |
| CAI8028494.1 | TATD FAMILY DEOXYRIBONUCLEASE |
| CAI8028492.1 | TATD FAMILY DEOXYRIBONUCLEASE |
| CAI8028491.1 | TATD FAMILY DEOXYRIBONUCLEASE |
| CAI8028495.1 | TATD FAMILY DEOXYRIBONUCLEASE |
| CAI8028496.1 | |
| CAI8028497.1 | |
| CAI8028499.1 | SERINE PROTEASE INHIBITOR |
| CAI8028498.1 | SERINE PROTEASE INHIBITOR |
| CAI8028500.1 | INTEGRIN ALPHA |
| CAI8028501.1 | |
| CAI8028502.1 | INTEGRIN ALPHA |
| CAI8028503.1 | |
| CAI8028504.1 | |
| CAI8028505.1 | |
| CAI8028506.1 | INTEGRIN ALPHA |
| CAI8028508.1 | INTEGRIN ALPHA |
| CAI8028509.1 | INTEGRIN ALPHA |
| CAI8028507.1 | INTEGRIN ALPHA |
| CAI8028510.1 | INTEGRIN ALPHA |
| CAI8028512.1 | INTEGRIN ALPHA |
| CAI8028511.1 | INTEGRIN ALPHA |
| CAI8028513.1 | INTEGRIN ALPHA |
| CAI8028515.1 | FORMIN-LIKE PROTEIN |
| CAI8028514.1 | FORMIN-LIKE PROTEIN |
| CAI8028519.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8028518.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8028517.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8028516.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8028520.1 | PROTEIN KINASE C, MU |
