Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028622.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8028623.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8028621.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8028624.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8028627.1 | MALE FERTILITY FACTOR KL5 |
| CAI8028626.1 | MALE FERTILITY FACTOR KL5 |
| CAI8028625.1 | MALE FERTILITY FACTOR KL5 |
| CAI8028628.1 | |
| CAI8028629.1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
| CAI8028630.1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
| CAI8028631.1 | |
| CAI8028632.1 | |
| CAI8028633.1 | |
| CAI8028634.1 | |
| CAI8028637.1 | MALATE DEHYDROGENASE |
| CAI8028636.1 | MALATE DEHYDROGENASE |
| CAI8028635.1 | MALATE DEHYDROGENASE |
| CAI8028638.1 | MALATE DEHYDROGENASE |
| CAI8028639.1 | MALATE DEHYDROGENASE |
| CAI8028640.1 | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED |
| CAI8028641.1 | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED |
| CAI8028642.1 | |
| CAI8028643.1 | ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN |
| CAI8028646.1 | ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN |
| CAI8028645.1 | ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN |
| CAI8028644.1 | ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN |
| CAI8028647.1 | ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN |
| CAI8028659.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028654.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028655.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028650.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028649.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028660.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028656.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028658.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028651.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028657.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028652.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028653.1 | RIBOSOME BINDING PROTEIN-1 |
| CAI8028648.1 | |
| CAI8028662.1 | NYD-SP28 PROTEIN |
| CAI8028661.1 | NYD-SP28 PROTEIN |
| CAI8028663.1 | NYD-SP28 PROTEIN |
| CAI8028667.1 | |
| CAI8028666.1 | |
| CAI8028664.1 | TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 1 |
| CAI8028665.1 | |
| CAI8028668.1 | |
| CAI8028669.1 | |
| CAI8028670.1 |
