Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028721.1 | |
| CAI8028722.1 | |
| CAI8028726.1 | RAS GTPASE-ACTIVATING PROTEINS |
| CAI8028725.1 | RAS GTPASE-ACTIVATING PROTEINS |
| CAI8028724.1 | |
| CAI8028723.1 | |
| CAI8028727.1 | RAS GTPASE-ACTIVATING PROTEINS |
| CAI8028728.1 | |
| CAI8028729.1 | RAS GTPASE-ACTIVATING PROTEINS |
| CAI8028730.1 | RAS GTPASE-ACTIVATING PROTEINS |
| CAI8028731.1 | |
| CAI8028732.1 | |
| CAI8028733.1 | |
| CAI8028734.1 | 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN |
| CAI8028735.1 | |
| CAI8028737.1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| CAI8028736.1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
| CAI8028738.1 | |
| CAI8028739.1 | |
| CAI8028740.1 | |
| CAI8028741.1 | |
| CAI8028742.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8028743.1 | PROTEIN FOLDING REGULATOR |
| CAI8028744.1 | |
| CAI8028745.1 | |
| CAI8028746.1 | |
| CAI8028748.1 | |
| CAI8028747.1 | |
| CAI8028749.1 | |
| CAI8028750.1 | |
| CAI8028751.1 | |
| CAI8028753.1 | |
| CAI8028752.1 | |
| CAI8028755.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8028754.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8028756.1 | |
| CAI8028762.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8028758.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8028760.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8028759.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8028757.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8028761.1 | |
| CAI8028763.1 | |
| CAI8028764.1 | SI:CH211-189E2.2 |
| CAI8028765.1 | THIOSULFATE SULFERTANSFERASE |
| CAI8028767.1 | |
| CAI8028766.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8028769.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8028768.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8028770.1 | TNF RECEPTOR ASSOCIATED FACTOR |
