Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028822.1 | MASK PROTEIN |
| CAI8028821.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8028823.1 | |
| CAI8028825.1 | |
| CAI8028824.1 | |
| CAI8028826.1 | |
| CAI8028827.1 | |
| CAI8028829.1 | |
| CAI8028828.1 | |
| CAI8028830.1 | |
| CAI8028831.1 | |
| CAI8028832.1 | |
| CAI8028833.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8028834.1 | NADPH NITROREDUCTASE |
| CAI8028835.1 | TRANSKETOLASE |
| CAI8028836.1 | TRANSKETOLASE |
| CAI8028837.1 | TRANSKETOLASE |
| CAI8028838.1 | TRANSKETOLASE |
| CAI8028839.1 | GLUCOSE-6-PHOSPHATE ISOMERASE |
| CAI8028840.1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
| CAI8028841.1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| CAI8028842.1 | 5-OXOPROLINASE RELATED |
| CAI8028843.1 | SECRETED GLYCOSYL HYDROLASE |
| CAI8028844.1 | EPOXIDE HYDROLASE |
| CAI8028845.1 | 5-OXOPROLINASE RELATED |
| CAI8028846.1 | PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED |
| CAI8028847.1 | CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 |
| CAI8028848.1 | |
| CAI8028850.1 | |
| CAI8028849.1 | |
| CAI8028851.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8028852.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8028853.1 | |
| CAI8028854.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8028855.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8028856.1 | DENSITY-REGULATED PROTEIN HOMOLOG |
| CAI8028857.1 | |
| CAI8028858.1 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED |
| CAI8028859.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8028860.1 | PORPHOBILINOGEN DEAMINASE |
| CAI8028861.1 | SIROHEME SYNTHASE-RELATED |
| CAI8028862.1 | |
| CAI8028864.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI8028863.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI8028865.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8028866.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8028867.1 | CYSTEINE DESULFURASE |
| CAI8028868.1 | CYSTEINE DESULFURASE |
| CAI8028869.1 | CYSTEINE DESULFURASE |
| CAI8028870.1 | CYSTEINE DESULFURASE |
