Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028672.1 | |
| CAI8028671.1 | |
| CAI8028674.1 | |
| CAI8028673.1 | |
| CAI8028675.1 | |
| CAI8028682.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028679.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028681.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028680.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028677.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028678.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028676.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028683.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028685.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028684.1 | INTEGRATOR COMPLEX SUBUNIT 3 |
| CAI8028686.1 | PROMININ PROM PROTEIN |
| CAI8028693.1 | |
| CAI8028689.1 | |
| CAI8028688.1 | |
| CAI8028692.1 | |
| CAI8028690.1 | |
| CAI8028687.1 | |
| CAI8028691.1 | |
| CAI8028695.1 | |
| CAI8028694.1 | |
| CAI8028696.1 | INTEGRIN BETA SUBUNIT |
| CAI8028697.1 | |
| CAI8028698.1 | |
| CAI8028699.1 | |
| CAI8028700.1 | MAKORIN-RELATED |
| CAI8028702.1 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 |
| CAI8028701.1 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 |
| CAI8028704.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8028703.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8028705.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8028706.1 | |
| CAI8028707.1 | |
| CAI8028708.1 | |
| CAI8028709.1 | |
| CAI8028716.1 | GLYCOSYLTRANSFERASE |
| CAI8028718.1 | |
| CAI8028717.1 | GLYCOSYLTRANSFERASE |
| CAI8028713.1 | |
| CAI8028714.1 | |
| CAI8028712.1 | GLYCOSYLTRANSFERASE |
| CAI8028711.1 | GLYCOSYLTRANSFERASE |
| CAI8028710.1 | GLYCOSYLTRANSFERASE |
| CAI8028715.1 | |
| CAI8028719.1 | |
| CAI8028720.1 |
