Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029021.1 | SOLUTE CARRIER FAMILY 13 MEMBER |
| CAI8029022.1 | EBNA2 BINDING PROTEIN P100 |
| CAI8029023.1 | THIOSULFATE SULFURTRANSFERASE |
| CAI8029024.1 | OS01G0149700 PROTEIN |
| CAI8029025.1 | UNCHARACTERIZED |
| CAI8029026.1 | |
| CAI8029028.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8029027.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8029029.1 | TRYPTOPHANYL-TRNA SYNTHETASE |
| CAI8029030.1 | TRANSAMIDASE |
| CAI8029031.1 | TRANSAMIDASE |
| CAI8029032.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8029033.1 | |
| CAI8029039.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8029038.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8029040.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8029037.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8029035.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8029036.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8029034.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8029041.1 | H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE |
| CAI8029043.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1 |
| CAI8029042.1 | RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1 |
| CAI8029044.1 | GLYCOSYLATED LYSOSOMAL MEMBRANE PROTEIN |
| CAI8029045.1 | |
| CAI8029046.1 | PROTEIN DIAPHANOUS |
| CAI8029052.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029051.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029050.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029049.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029048.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029047.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029055.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029054.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029053.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029057.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029056.1 | |
| CAI8029058.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029059.1 | |
| CAI8029060.1 | CYTOKINE RECEPTOR |
| CAI8029061.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8029064.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8029063.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8029062.1 | |
| CAI8029065.1 | IRON (METAL) DEPENDENT REPRESSOR, DTXR FAMILY |
| CAI8029066.1 | |
| CAI8029067.1 | |
| CAI8029068.1 | DETHIOBIOTIN SYNTHETASE |
| CAI8029069.1 | 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE |
| CAI8029070.1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
