Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029321.1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| CAI8029322.1 | TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE |
| CAI8029323.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8029324.1 | |
| CAI8029325.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8029326.1 | EFFLUX SYSTEM COMPONENT YKNX-RELATED |
| CAI8029327.1 | HYDROLASE C777.06C-RELATED-RELATED |
| CAI8029328.1 | TRANSAMINASE |
| CAI8029329.1 | |
| CAI8029330.1 | |
| CAI8029331.1 | MALE STERILITY PROTEIN 2-RELATED |
| CAI8029332.1 | SLR8030 PROTEIN |
| CAI8029333.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8029335.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8029338.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8029336.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8029337.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8029334.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8029339.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8029340.1 | RIBONUCLEASE J |
| CAI8029341.1 | HOMOACONITASE, MITOCHONDRIAL-RELATED |
| CAI8029342.1 | 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED |
| CAI8029343.1 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI8029345.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8029344.1 | |
| CAI8029346.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8029347.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8029349.1 | PROTEIN DOK-7 |
| CAI8029348.1 | PROTEIN DOK-7 |
| CAI8029350.1 | |
| CAI8029351.1 | |
| CAI8029352.1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B |
| CAI8029353.1 | |
| CAI8029354.1 | |
| CAI8029355.1 | |
| CAI8029356.1 | |
| CAI8029357.1 | |
| CAI8029358.1 | |
| CAI8029361.1 | TYROSINASE FAMILY MEMBER |
| CAI8029360.1 | TYROSINASE FAMILY MEMBER |
| CAI8029359.1 | TYROSINASE FAMILY MEMBER |
| CAI8029362.1 | TYROSINASE FAMILY MEMBER |
| CAI8029363.1 | |
| CAI8029364.1 | TYROSINASE FAMILY MEMBER |
| CAI8029365.1 | TYROSINASE FAMILY MEMBER |
| CAI8029366.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8029367.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8029368.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8029369.1 | |
| CAI8029370.1 | VILLIN |
