Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029521.1 | U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 |
| CAI8029520.1 | U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 |
| CAI8029522.1 | U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 |
| CAI8029525.1 | |
| CAI8029524.1 | |
| CAI8029526.1 | |
| CAI8029527.1 | ATR-INTERACTING PROTEIN |
| CAI8029528.1 | |
| CAI8029529.1 | SERINE PROTEASE |
| CAI8029534.1 | DYNEIN HEAVY CHAIN |
| CAI8029535.1 | DYNEIN HEAVY CHAIN |
| CAI8029533.1 | DYNEIN HEAVY CHAIN |
| CAI8029532.1 | DYNEIN HEAVY CHAIN |
| CAI8029531.1 | DYNEIN HEAVY CHAIN |
| CAI8029530.1 | DYNEIN HEAVY CHAIN |
| CAI8029536.1 | DYNEIN HEAVY CHAIN |
| CAI8029537.1 | |
| CAI8029538.1 | |
| CAI8029539.1 | |
| CAI8029540.1 | |
| CAI8029541.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8029542.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8029543.1 | TRANSMEMBRANE PROTEIN ADIPOCYTE-ASSOCIATED 1 |
| CAI8029545.1 | |
| CAI8029544.1 | |
| CAI8029546.1 | |
| CAI8029547.1 | TRANSMEMBRANE PROTEIN ADIPOCYTE-ASSOCIATED 1 |
| CAI8029550.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
| CAI8029552.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
| CAI8029551.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
| CAI8029549.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
| CAI8029548.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
| CAI8029553.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
| CAI8029554.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
| CAI8029555.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
| CAI8029556.1 | |
| CAI8029558.1 | |
| CAI8029557.1 | |
| CAI8029560.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8029559.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8029561.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8029562.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| CAI8029563.1 | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED |
| CAI8029565.1 | DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 |
| CAI8029564.1 | DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 |
| CAI8029566.1 | DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 |
| CAI8029567.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5 |
| CAI8029569.1 | MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG |
| CAI8029568.1 | MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG |
| CAI8029570.1 | MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG |
