Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029821.1 | BRIDGING INTEGRATOR 3 |
| CAI8029822.1 | |
| CAI8029823.1 | |
| CAI8029825.1 | |
| CAI8029824.1 | |
| CAI8029828.1 | |
| CAI8029827.1 | |
| CAI8029826.1 | |
| CAI8029829.1 | |
| CAI8029830.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER |
| CAI8029834.1 | |
| CAI8029832.1 | |
| CAI8029835.1 | |
| CAI8029833.1 | |
| CAI8029831.1 | |
| CAI8029839.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029840.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029838.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029837.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029836.1 | MUCIN 4-RELATED |
| CAI8029841.1 | |
| CAI8029843.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029842.1 | MUCIN 4-RELATED |
| CAI8029844.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029846.1 | |
| CAI8029845.1 | |
| CAI8029847.1 | LIPOXYGENASE |
| CAI8029848.1 | |
| CAI8029849.1 | |
| CAI8029850.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8029851.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8029852.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8029853.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8029854.1 | RIBULOSE-5-PHOSPHATE-3-EPIMERASE |
| CAI8029855.1 | |
| CAI8029856.1 | BCDNA.GH03377 |
| CAI8029857.1 | |
| CAI8029858.1 | BETA-GALACTOSIDASE |
| CAI8029859.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8029860.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8029861.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8029862.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC |
| CAI8029864.1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
| CAI8029863.1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
| CAI8029865.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8029868.1 | DNA REPLICATION AND REPAIR PROTEIN RECF |
| CAI8029866.1 | DNA REPLICATION AND REPAIR PROTEIN RECF |
| CAI8029867.1 | DNA REPLICATION AND REPAIR PROTEIN RECF |
| CAI8029870.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8029869.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
