Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029922.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8029920.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8029923.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8029924.1 | |
| CAI8029925.1 | |
| CAI8029926.1 | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED |
| CAI8029927.1 | |
| CAI8029928.1 | |
| CAI8029929.1 | |
| CAI8029930.1 | |
| CAI8029931.1 | |
| CAI8029932.1 | |
| CAI8029933.1 | |
| CAI8029934.1 | |
| CAI8029935.1 | |
| CAI8029936.1 | E3 UBIQUITIN-PROTEIN LIGASE CHIP |
| CAI8029937.1 | E3 UBIQUITIN-PROTEIN LIGASE CHIP |
| CAI8029938.1 | E3 UBIQUITIN-PROTEIN LIGASE CHIP |
| CAI8029939.1 | E3 UBIQUITIN-PROTEIN LIGASE CHIP |
| CAI8029941.1 | UNCHARACTERIZED |
| CAI8029940.1 | UNCHARACTERIZED |
| CAI8029942.1 | CONDENSIN COMPLEX SUBUNIT 2 |
| CAI8029943.1 | CONDENSIN COMPLEX SUBUNIT 2 |
| CAI8029945.1 | |
| CAI8029944.1 | |
| CAI8029946.1 | |
| CAI8029947.1 | |
| CAI8029948.1 | |
| CAI8029949.1 | PROTEIN SIDEKICK |
| CAI8029950.1 | |
| CAI8029951.1 | |
| CAI8029953.1 | |
| CAI8029952.1 | |
| CAI8029956.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8029955.1 | |
| CAI8029954.1 | |
| CAI8029958.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8029957.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8029959.1 | |
| CAI8029960.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8029962.1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| CAI8029961.1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| CAI8029963.1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| CAI8029964.1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| CAI8029965.1 | |
| CAI8029966.1 | 60S RIBOSOMAL PROTEIN L7 |
| CAI8029967.1 | 60S RIBOSOMAL PROTEIN L7 |
| CAI8029969.1 | |
| CAI8029970.1 | TITIN |
| CAI8029968.1 | TITIN |
