Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029871.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8029872.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT A |
| CAI8029873.1 | |
| CAI8029874.1 | |
| CAI8029875.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8029876.1 | |
| CAI8029877.1 | WD40 REPEAT PROTEIN |
| CAI8029878.1 | WD40 REPEAT PROTEIN |
| CAI8029889.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029884.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029887.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029888.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029886.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029885.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029882.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029883.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029881.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029880.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029879.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8029890.1 | HYPOTHETICAL 460 KDA PROTEIN IN FEUA-SIGW INTERGENIC REGION [PRECURSOR] |
| CAI8029891.1 | GLUCOSE-6-PHOSPHATE ISOMERASE |
| CAI8029892.1 | SENSOR HISTIDINE KINASE CPXA |
| CAI8029893.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8029894.1 | |
| CAI8029895.1 | NAD(P)H NITROREDUCTASE YDJA-RELATED |
| CAI8029896.1 | AMIDOHYDROLASE |
| CAI8029897.1 | CYTOCHROME B |
| CAI8029898.1 | BCDNA.GH03377 |
| CAI8029899.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8029900.1 | |
| CAI8029901.1 | |
| CAI8029902.1 | |
| CAI8029903.1 | |
| CAI8029905.1 | GABA-B RECEPTOR |
| CAI8029904.1 | GABA-B RECEPTOR |
| CAI8029907.1 | GABA-B RECEPTOR |
| CAI8029906.1 | GABA-B RECEPTOR |
| CAI8029908.1 | |
| CAI8029909.1 | |
| CAI8029910.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| CAI8029911.1 | SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT |
| CAI8029912.1 | SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT |
| CAI8029916.1 | |
| CAI8029917.1 | |
| CAI8029915.1 | |
| CAI8029914.1 | |
| CAI8029913.1 | |
| CAI8029919.1 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 |
| CAI8029918.1 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 |
| CAI8029921.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
