Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030522.1 | SORTILIN RELATED |
| CAI8030523.1 | SORTILIN RELATED |
| CAI8030521.1 | SORTILIN RELATED |
| CAI8030524.1 | SORTILIN RELATED |
| CAI8030518.1 | SORTILIN RELATED |
| CAI8030526.1 | SORTILIN RELATED |
| CAI8030529.1 | CHONDROITIN SYNTHASE |
| CAI8030528.1 | CHONDROITIN SYNTHASE |
| CAI8030527.1 | CHONDROITIN SYNTHASE |
| CAI8030530.1 | ARGININE/SERINE RICH SPLICING FACTOR SF4/14 |
| CAI8030531.1 | |
| CAI8030532.1 | |
| CAI8030533.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8030534.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8030535.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8030536.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8030537.1 | SMALL EDRK-RICH FACTOR 1 |
| CAI8030538.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER |
| CAI8030543.1 | RNA POLYMERASE III DNA DIRECTED -RELATED |
| CAI8030544.1 | RNA POLYMERASE III DNA DIRECTED -RELATED |
| CAI8030541.1 | RNA POLYMERASE III DNA DIRECTED -RELATED |
| CAI8030542.1 | RNA POLYMERASE III DNA DIRECTED -RELATED |
| CAI8030540.1 | RNA POLYMERASE III DNA DIRECTED -RELATED |
| CAI8030539.1 | RNA POLYMERASE III DNA DIRECTED -RELATED |
| CAI8030545.1 | DEATH DOMAIN-CONTAINING PROTEIN |
| CAI8030546.1 | SERINE/THREONINE-PROTEIN KINASE 17 |
| CAI8030547.1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| CAI8030548.1 | POLY [ADP-RIBOSE] POLYMERASE |
| CAI8030549.1 | POLY [ADP-RIBOSE] POLYMERASE |
| CAI8030551.1 | |
| CAI8030550.1 | |
| CAI8030552.1 | |
| CAI8030553.1 | |
| CAI8030555.1 | VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE |
| CAI8030554.1 | VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE |
| CAI8030556.1 | TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE |
| CAI8030557.1 | TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE |
| CAI8030559.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8030558.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8030560.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8030563.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8030561.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8030562.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8030564.1 | |
| CAI8030575.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030574.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030573.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030571.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030572.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030569.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
