Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030570.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030568.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030567.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030565.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030566.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030577.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030576.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8030578.1 | PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PST |
| CAI8030579.1 | PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU |
| CAI8030580.1 | |
| CAI8030581.1 | REGULATOR OF RPOS |
| CAI8030583.1 | FRUCTOSE-1,6-BISPHOSPHATASE-RELATED |
| CAI8030582.1 | FRUCTOSE-1,6-BISPHOSPHATASE-RELATED |
| CAI8030584.1 | |
| CAI8030585.1 | |
| CAI8030586.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8030588.1 | PHOSPHOCARRIER PROTEIN HPR |
| CAI8030587.1 | PHOSPHOCARRIER PROTEIN HPR |
| CAI8030589.1 | UNCHARACTERIZED |
| CAI8030593.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8030592.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8030591.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8030590.1 | |
| CAI8030594.1 | LIPID A BIOSYNTHESIS LAUROYL ACYLTRANSFERASE |
| CAI8030595.1 | SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA |
| CAI8030596.1 | SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA |
| CAI8030597.1 | - |
| CAI8030598.1 | |
| CAI8030599.1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
| CAI8030600.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8030601.1 | |
| CAI8030602.1 | BCDNA.GH03377 |
| CAI8030603.1 | |
| CAI8030604.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8030605.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8030606.1 | |
| CAI8030607.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8030608.1 | BCDNA.GH03377 |
| CAI8030609.1 | |
| CAI8030610.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8030611.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8030612.1 | 2-HACID_DH_C DOMAIN-CONTAINING PROTEIN |
| CAI8030615.1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
| CAI8030614.1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
| CAI8030613.1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
| CAI8030616.1 | RNA POLYMERASE ECF-TYPE SIGMA FACTO |
| CAI8030617.1 | TRANSCRIPTIONAL REGULATOR, MARR FAMILY |
| CAI8030618.1 | LAR_N DOMAIN-CONTAINING PROTEIN |
| CAI8030620.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8030619.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
