About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8030621.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI8030622.1CYSTATHIONINE BETA-SYNTHASE
CAI8030623.15'-ADENYLYLSULFATE REDUCTASE 3, CHLOROPLASTIC
CAI8030624.1SULFUR CARRIER PROTEIN SLR0821-RELATED
CAI8030625.1
CAI8030626.1ATP PHOSPHORIBOSYLTRANSFERASE ATP-PRTASE
CAI8030627.1
CAI8030628.1
CAI8030630.1SERINE HYDROXYMETHYLTRANSFERASE
CAI8030629.1SERINE HYDROXYMETHYLTRANSFERASE
CAI8030631.1GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE
CAI8030632.1DCTP DEAMINASE
CAI8030633.1
CAI8030634.1
CAI8030635.1IRON-SULFUR DOMAIN CONTAINING PROTEIN
CAI8030636.1AMINO ACID IMPORT ATP-BINDING PROTEIN
CAI8030637.1AMINO ACID IMPORT ATP-BINDING PROTEIN
CAI8030638.1DEHYDROGENASES, SHORT CHAIN
CAI8030639.1DEHYDROGENASES, SHORT CHAIN
CAI8030640.1DEHYDROGENASES, SHORT CHAIN
CAI8030641.1
CAI8030642.1DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED
CAI8030643.1MAGNESIUM-CHELATASE SUBUNIT CHLI
CAI8030646.1PHAGE INTEGRASE-RELATED
CAI8030644.1PHAGE INTEGRASE-RELATED
CAI8030645.1PHAGE INTEGRASE-RELATED
CAI8030647.1
CAI8030648.1
CAI8030649.1PAREP8-RELATED
CAI8030650.1
CAI8030651.1HOMOCITRATE SYNTHASE-RELATED
CAI8030655.1KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL
CAI8030654.1KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL
CAI8030653.1KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL
CAI8030652.1KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL
CAI8030657.1ACETOLACTATE SYNTHASE SMALL SUBUNIT
CAI8030656.1ACETOLACTATE SYNTHASE SMALL SUBUNIT
CAI8030658.1
CAI8030659.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8030660.1-
CAI8030661.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
CAI8030662.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
CAI8030663.1UBIQUITIN-CONJUGATING ENZYME E2
CAI8030664.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
CAI8030665.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
CAI8030667.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
CAI8030666.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
CAI8030668.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
CAI8030669.1
CAI8030670.1
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