Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030721.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8030722.1 | |
| CAI8030724.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8030723.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8030725.1 | |
| CAI8030726.1 | RIBONUCLEASE VAPC13 |
| CAI8030728.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8030727.1 | SI:CH211-189E2.2 |
| CAI8030729.1 | |
| CAI8030730.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8030731.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8030732.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI8030733.1 | |
| CAI8030734.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8030735.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8030736.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8030737.1 | PHYTOCHROME-LIKE PROTEIN CPH1 |
| CAI8030738.1 | RESPONSE REGULATOR RCP1-RELATED |
| CAI8030739.1 | RESPONSE REGULATOR RCP1-RELATED |
| CAI8030740.1 | |
| CAI8030741.1 | |
| CAI8030742.1 | METHANETHIOL OXIDASE |
| CAI8030743.1 | SELENOPROTEIN O |
| CAI8030744.1 | SELENOPROTEIN O |
| CAI8030745.1 | SELENOPROTEIN O |
| CAI8030746.1 | CARBOHYDRATE SULFOTRANSFERASE 15 |
| CAI8030750.1 | EXPORTIN 1/5 |
| CAI8030751.1 | EXPORTIN 1/5 |
| CAI8030749.1 | EXPORTIN 1/5 |
| CAI8030748.1 | EXPORTIN 1/5 |
| CAI8030747.1 | CBF1 INTERACTING COREPRESSOR CIR |
| CAI8030752.1 | EXPORTIN 1/5 |
| CAI8030753.1 | |
| CAI8030754.1 | - |
| CAI8030755.1 | |
| CAI8030756.1 | |
| CAI8030757.1 | |
| CAI8030758.1 | |
| CAI8030759.1 | |
| CAI8030760.1 | |
| CAI8030762.1 | |
| CAI8030761.1 | |
| CAI8030763.1 | |
| CAI8030764.1 | |
| CAI8030765.1 | |
| CAI8030766.1 | |
| CAI8030767.1 | |
| CAI8030768.1 | |
| CAI8030769.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| CAI8030770.1 |
