Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030871.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8030872.1 | ANKYRIN REPEAT PROTEIN |
| CAI8030873.1 | |
| CAI8030874.1 | |
| CAI8030875.1 | |
| CAI8030876.1 | |
| CAI8030877.1 | GLUTAMINE SYNTHETASE |
| CAI8030880.1 | GLUTAMINE SYNTHETASE |
| CAI8030879.1 | GLUTAMINE SYNTHETASE |
| CAI8030878.1 | GLUTAMINE SYNTHETASE |
| CAI8030881.1 | GLUTAMINE SYNTHETASE |
| CAI8030882.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8030883.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8030885.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8030884.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8030887.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8030886.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8030888.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8030889.1 | |
| CAI8030890.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8030891.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8030892.1 | DNA-3-METHYLADENINE GLYCOSYLASE 1 |
| CAI8030893.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8030894.1 | FAD-BINDING, PUTATIVE (AFU_ORTHOLOGUE AFUA_6G07600)-RELATED |
| CAI8030895.1 | BARREL METAL-DEPENDENT HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G16240)-RELATED |
| CAI8030896.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8030897.1 | PHOSPHONATES-BINDING PERIPLASMIC PROTEIN |
| CAI8030898.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8030899.1 | |
| CAI8030900.1 | |
| CAI8030901.1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| CAI8030902.1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| CAI8030903.1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
| CAI8030904.1 | GLUCOSE-6-PHOSPHATE ISOMERASE |
| CAI8030905.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8030906.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8030907.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8030908.1 | |
| CAI8030909.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8030913.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8030915.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8030912.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8030914.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8030911.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8030910.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8030916.1 | SLR1406 PROTEIN |
| CAI8030917.1 | CYCLASE-LIKE PROTEIN 2 |
| CAI8030918.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8030919.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8030920.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE |
