Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030972.1 | HSC70CB, ISOFORM G-RELATED |
| CAI8030970.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8030975.1 | |
| CAI8030973.1 | |
| CAI8030974.1 | |
| CAI8030976.1 | |
| CAI8030977.1 | INOSITOL POLYPHOSPHATE KINASE |
| CAI8030978.1 | - |
| CAI8030979.1 | - |
| CAI8030980.1 | RIBONUCLEASE |
| CAI8030981.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8030982.1 | THIAZOLE SYNTHASE |
| CAI8030983.1 | CATABOLIC 3-DEHYDROQUINASE |
| CAI8030984.1 | OXALOACETATE DECARBOXYLASE ALPHA CHAIN |
| CAI8030985.1 | PYRUVATE CARBOXYLASE SUBUNIT A |
| CAI8030986.1 | LEUCYL/PHENYLALANYL-TRNA--PROTEIN TRANSFERASE |
| CAI8030987.1 | LEUCYL/PHENYLALANYL-TRNA--PROTEIN TRANSFERASE |
| CAI8030988.1 | |
| CAI8030989.1 | LEUCYL/PHENYLALANYL-TRNA--PROTEIN TRANSFERASE |
| CAI8030990.1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
| CAI8030991.1 | DIHYDROANTICAPSIN 7-DEHYDROGENASE |
| CAI8030992.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI8030993.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8030994.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
| CAI8030995.1 | |
| CAI8030996.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI8030997.1 | TRNA MODIFICATION GTPASE GTPBP3 |
| CAI8030998.1 | |
| CAI8030999.1 | GLUCOSE INHIBITED DIVISION PROTEIN A |
| CAI8031000.1 | GLUCOSE INHIBITED DIVISION PROTEIN A |
| CAI8031001.1 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE |
| CAI8031002.1 | CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED |
| CAI8031007.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8031006.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8031005.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8031004.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8031003.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8031008.1 | DCTP DEAMINASE |
| CAI8031009.1 | UPF0093 MEMBRANE PROTEIN SLR1790 |
| CAI8031011.1 | FERROCHELATASE |
| CAI8031010.1 | FERROCHELATASE |
| CAI8031013.1 | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED |
| CAI8031012.1 | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED |
| CAI8031014.1 | PYRUVATE, PHOSPHATE DIKINASE REGULATORY PROTEIN 1, CHLOROPLASTIC |
| CAI8031015.1 | |
| CAI8031016.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8031017.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8031018.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8031019.1 | |
| CAI8031020.1 | SHIKIMATE DEHYDROGENASE |
