Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031171.1 | AMINOTRANSFERASE CLASS V |
| CAI8031174.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8031173.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8031172.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8031175.1 | GH17980P-RELATED |
| CAI8031176.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8031177.1 | - |
| CAI8031182.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8031181.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8031179.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8031180.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8031183.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8031178.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) |
| CAI8031184.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8031185.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8031187.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW |
| CAI8031186.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW |
| CAI8031188.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8031189.1 | RECEPTOR KINASE-LIKE PROTEIN XA21 |
| CAI8031190.1 | INNER MEMBRANE PROTEIN-RELATED-RELATED |
| CAI8031191.1 | |
| CAI8031192.1 | |
| CAI8031193.1 | |
| CAI8031194.1 | |
| CAI8031195.1 | |
| CAI8031196.1 | |
| CAI8031197.1 | COLLAGEN ALPHA |
| CAI8031198.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8031199.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI8031200.1 | MONOACYLGLYCEROL LIPASE |
| CAI8031201.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8031202.1 | - |
| CAI8031205.1 | GUANYLATE KINASE-RELATED |
| CAI8031204.1 | GUANYLATE KINASE-RELATED |
| CAI8031203.1 | GUANYLATE KINASE-RELATED |
| CAI8031206.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8031207.1 | PHOSPHATASE YCDX-RELATED |
| CAI8031208.1 | PRENYLTRANSFERASES |
| CAI8031209.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8031210.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8031211.1 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE |
| CAI8031213.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8031212.1 | UDP-GLUCOSE 4-EPIMERASE |
| CAI8031214.1 | GENERAL STRESS PROTEIN |
| CAI8031216.1 | GLUTAMYL-TRNA REDUCTASE |
| CAI8031215.1 | GLUTAMYL-TRNA REDUCTASE |
| CAI8031217.1 | |
| CAI8031218.1 | DEGV DOMAIN-CONTAINING PROTEIN DR_1986-RELATED |
| CAI8031219.1 | DEGV DOMAIN-CONTAINING PROTEIN DR_1986-RELATED |
| CAI8031220.1 |
