Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031321.1 | CONDENSIN |
| CAI8031322.1 | CONDENSIN |
| CAI8031323.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI8031324.1 | CELL DIVISION PROTEIN KINASE |
| CAI8031325.1 | PROTEASE S8 TRIPEPTIDYL PEPTIDASE I CLN2 |
| CAI8031326.1 | |
| CAI8031327.1 | |
| CAI8031328.1 | |
| CAI8031329.1 | SORTING NEXIN |
| CAI8031330.1 | SORTING NEXIN |
| CAI8031331.1 | ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER |
| CAI8031333.1 | PROTEIN LZIC |
| CAI8031332.1 | |
| CAI8031334.1 | |
| CAI8031336.1 | |
| CAI8031335.1 | - |
| CAI8031337.1 | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER |
| CAI8031338.1 | |
| CAI8031340.1 | MYB-BINDING PROTEIN 1A FAMILY MEMBER |
| CAI8031339.1 | MYB-BINDING PROTEIN 1A FAMILY MEMBER |
| CAI8031343.1 | MITOCHONDRIAL CARRIER PROTEIN RIM2 |
| CAI8031344.1 | MITOCHONDRIAL CARRIER PROTEIN RIM2 |
| CAI8031342.1 | MITOCHONDRIAL CARRIER PROTEIN RIM2 |
| CAI8031341.1 | MITOCHONDRIAL CARRIER PROTEIN RIM2 |
| CAI8031345.1 | MITOCHONDRIAL CARRIER PROTEIN RIM2 |
| CAI8031346.1 | MITOCHONDRIAL CARRIER PROTEIN RIM2 |
| CAI8031347.1 | |
| CAI8031348.1 | ACID PHOSPHATASE-RELATED |
| CAI8031349.1 | |
| CAI8031350.1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
| CAI8031351.1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
| CAI8031354.1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| CAI8031353.1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| CAI8031352.1 | |
| CAI8031355.1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| CAI8031356.1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| CAI8031358.1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| CAI8031357.1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| CAI8031360.1 | |
| CAI8031359.1 | DNA-DIRECTED RNA POLYMERASE II, III |
| CAI8031361.1 | |
| CAI8031362.1 | |
| CAI8031363.1 | |
| CAI8031365.1 | |
| CAI8031364.1 | |
| CAI8031366.1 | |
| CAI8031369.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8031367.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8031368.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8031370.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
