Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031271.1 | ALDEHYDE FERREDOXIN OXIDOREDUCTASE |
| CAI8031272.1 | OXIDOREDUCTASE |
| CAI8031273.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8031274.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI8031276.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA |
| CAI8031275.1 | |
| CAI8031277.1 | |
| CAI8031278.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8031280.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8031279.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8031281.1 | |
| CAI8031283.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8031282.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8031284.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8031285.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8031286.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI8031287.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8031288.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8031289.1 | DNA-3-METHYLADENINE GLYCOSYLASE |
| CAI8031290.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8031291.1 | QUEUOSINE PRECURSOR TRANSPORTER-RELATED |
| CAI8031292.1 | |
| CAI8031293.1 | |
| CAI8031294.1 | QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED |
| CAI8031295.1 | HEMIN IMPORT ATP-BINDING PROTEIN HMUV |
| CAI8031299.1 | FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN |
| CAI8031298.1 | FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN |
| CAI8031297.1 | FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN |
| CAI8031296.1 | FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN |
| CAI8031300.1 | COBALAMIN BIOSYNTHESIS PROTEIN CBIB |
| CAI8031301.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8031302.1 | EXODEOXYRIBONUCLEASE 7 SMALL SUBUNIT |
| CAI8031303.1 | FARNESYL DIPHOSPHATE SYNTHASE |
| CAI8031304.1 | 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE |
| CAI8031305.1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| CAI8031306.1 | ALCOHOL DEHYDROGENASE |
| CAI8031307.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8031308.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8031309.1 | UPF0145 PROTEIN YBJQ |
| CAI8031310.1 | UPF0145 PROTEIN YBJQ |
| CAI8031311.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8031312.1 | |
| CAI8031313.1 | PROTEIN SIDEKICK |
| CAI8031314.1 | CYTOKINE RECEPTOR |
| CAI8031315.1 | |
| CAI8031316.1 | CONDENSIN |
| CAI8031317.1 | CONDENSIN |
| CAI8031318.1 | CONDENSIN |
| CAI8031319.1 | CONDENSIN |
| CAI8031320.1 | CONDENSIN |
