Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031421.1 | AGAP001623-PA |
| CAI8031422.1 | AGAP001623-PA |
| CAI8031423.1 | |
| CAI8031425.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031424.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031426.1 | |
| CAI8031427.1 | |
| CAI8031428.1 | |
| CAI8031429.1 | |
| CAI8031430.1 | |
| CAI8031431.1 | |
| CAI8031432.1 | |
| CAI8031435.1 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
| CAI8031434.1 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
| CAI8031433.1 | |
| CAI8031436.1 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
| CAI8031437.1 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
| CAI8031438.1 | |
| CAI8031439.1 | SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL |
| CAI8031440.1 | SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL |
| CAI8031441.1 | SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL |
| CAI8031442.1 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 |
| CAI8031443.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8031447.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8031446.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8031445.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8031444.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8031448.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8031449.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8031450.1 | - |
| CAI8031451.1 | |
| CAI8031452.1 | NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE |
| CAI8031453.1 | THIOSULFATE SULFURTRANSFERASE |
| CAI8031454.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8031455.1 | |
| CAI8031456.1 | |
| CAI8031457.1 | |
| CAI8031458.1 | |
| CAI8031459.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8031460.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8031461.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8031462.1 | |
| CAI8031463.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM |
| CAI8031464.1 | |
| CAI8031465.1 | |
| CAI8031466.1 | |
| CAI8031467.1 | |
| CAI8031468.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| CAI8031469.1 | |
| CAI8031470.1 |
