Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031521.1 | 30S RIBOSOMAL PROTEIN S14 |
| CAI8031522.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8031523.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8031524.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8031525.1 | NUCLEOTIDE KINASE |
| CAI8031526.1 | METHIONINE AMINOPEPTIDASE |
| CAI8031527.1 | TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC |
| CAI8031528.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8031529.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI8031530.1 | |
| CAI8031531.1 | RIBOSOMAL PROTEIN L17 |
| CAI8031532.1 | RIBOSOMAL PROTEIN L13 |
| CAI8031533.1 | RIBOSOMAL PROTEIN S9 |
| CAI8031535.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8031534.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8031536.1 | PHOSPHATIDYLINOSITOL KINASE |
| CAI8031537.1 | |
| CAI8031538.1 | |
| CAI8031539.1 | |
| CAI8031540.1 | |
| CAI8031541.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8031542.1 | |
| CAI8031543.1 | ANAEROBIC MAGNESIUM-PROTOPORPHYRIN IX MONOMETHYL ESTER CYCLASE-RELATED |
| CAI8031544.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8031545.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8031546.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI8031547.1 | D-AMINOPEPTIDASE |
| CAI8031548.1 | VACUOLAR PROTEIN SORTING 26 RELATED |
| CAI8031550.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8031551.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8031549.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8031552.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8031553.1 | |
| CAI8031554.1 | |
| CAI8031555.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8031558.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8031557.1 | EPH RECEPTOR A5 |
| CAI8031556.1 | EPH RECEPTOR A5 |
| CAI8031559.1 | |
| CAI8031560.1 | |
| CAI8031561.1 | |
| CAI8031562.1 | |
| CAI8031563.1 | ELONGIN-C |
| CAI8031564.1 | PROTEIN STPG4 |
| CAI8031565.1 | |
| CAI8031566.1 | |
| CAI8031567.1 | |
| CAI8031568.1 | NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5 |
| CAI8031569.1 | |
| CAI8031571.1 | 40S RIBOSOMAL PROTEIN S7 |
