Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031570.1 | 40S RIBOSOMAL PROTEIN S7 |
| CAI8031572.1 | |
| CAI8031574.1 | |
| CAI8031573.1 | |
| CAI8031580.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031583.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031582.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031579.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031578.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031577.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031575.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031581.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031576.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031584.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8031585.1 | |
| CAI8031586.1 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED |
| CAI8031587.1 | |
| CAI8031588.1 | |
| CAI8031592.1 | UBIQUITINATION FACTOR E4 |
| CAI8031591.1 | UBIQUITINATION FACTOR E4 |
| CAI8031590.1 | |
| CAI8031589.1 | |
| CAI8031593.1 | AVIDIN-RELATED |
| CAI8031594.1 | NEDD4-BINDING PROTEIN 2 |
| CAI8031595.1 | H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE |
| CAI8031596.1 | |
| CAI8031597.1 | |
| CAI8031598.1 | |
| CAI8031599.1 | OS01G0149700 PROTEIN |
| CAI8031600.1 | UBIQUITIN |
| CAI8031601.1 | |
| CAI8031602.1 | |
| CAI8031603.1 | |
| CAI8031604.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8031605.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8031606.1 | PROTEIN DD3-3 |
| CAI8031607.1 | PROTEIN DD3-3 |
| CAI8031609.1 | PROTEIN DD3-3 |
| CAI8031608.1 | PROTEIN DD3-3 |
| CAI8031610.1 | PROTEIN DD3-3 |
| CAI8031612.1 | PROTEIN DD3-3 |
| CAI8031611.1 | PROTEIN DD3-3 |
| CAI8031613.1 | PROTEIN DD3-3 |
| CAI8031614.1 | PROTEIN DD3-3 |
| CAI8031615.1 | |
| CAI8031616.1 | |
| CAI8031617.1 | |
| CAI8031619.1 | RGD1561648 |
| CAI8031618.1 | RGD1561648 |
| CAI8031620.1 | RGD1561648 |
