Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032021.1 | |
| CAI8032022.1 | ACETOACETYL-COA SYNTHETASE |
| CAI8032023.1 | ACETOACETYL-COA SYNTHETASE |
| CAI8032026.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8032025.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8032024.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8032027.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8032028.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8032029.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8032030.1 | ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC |
| CAI8032031.1 | ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC |
| CAI8032032.1 | PROTEIN ABCI7, CHLOROPLASTIC |
| CAI8032033.1 | CYSTEINE DESULFURASE |
| CAI8032034.1 | IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG |
| CAI8032035.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI8032036.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI8032037.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI8032038.1 | NITRILASE C965.09-RELATED |
| CAI8032039.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8032040.1 | DNA-BINDING PROTEIN HU |
| CAI8032041.1 | DNA-BINDING PROTEIN HU |
| CAI8032042.1 | NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL |
| CAI8032043.1 | NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL |
| CAI8032044.1 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 |
| CAI8032045.1 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 |
| CAI8032046.1 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 |
| CAI8032047.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8032048.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8032049.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8032050.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 |
| CAI8032051.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8032052.1 | D-XYLOSE-BINDING PERIPLASMIC PROTEIN |
| CAI8032053.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8032054.1 | |
| CAI8032055.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8032056.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8032057.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8032058.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8032059.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8032060.1 | GLUTAMINE AMIDOTRANSFERASE YLR126C-RELATED |
| CAI8032061.1 | FLAVIN PRENYLTRANSFERASE |
| CAI8032062.1 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED |
| CAI8032063.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8032065.1 | SIT4 YEAST -ASSOCIATING PROTEIN-RELATED |
| CAI8032064.1 | SIT4 YEAST -ASSOCIATING PROTEIN-RELATED |
| CAI8032066.1 | SIT4 YEAST -ASSOCIATING PROTEIN-RELATED |
| CAI8032067.1 | DEOXYRIBOSE-PHOSPHATE ALDOLASE |
| CAI8032068.1 | |
| CAI8032071.1 | |
| CAI8032070.1 |
