Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031872.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8031871.1 | |
| CAI8031875.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8031874.1 | |
| CAI8031873.1 | |
| CAI8031876.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8031878.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8031877.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8031879.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8031880.1 | |
| CAI8031883.1 | PYRIDOXINE-5-PHOSPHATE OXIDASE |
| CAI8031882.1 | PYRIDOXINE-5-PHOSPHATE OXIDASE |
| CAI8031881.1 | PYRIDOXINE-5-PHOSPHATE OXIDASE |
| CAI8031885.1 | TOLL-LIKE RECEPTOR |
| CAI8031884.1 | |
| CAI8031886.1 | TOLL-LIKE RECEPTOR |
| CAI8031887.1 | |
| CAI8031888.1 | |
| CAI8031889.1 | |
| CAI8031894.1 | |
| CAI8031893.1 | |
| CAI8031892.1 | |
| CAI8031891.1 | |
| CAI8031890.1 | |
| CAI8031895.1 | |
| CAI8031896.1 | |
| CAI8031897.1 | |
| CAI8031898.1 | |
| CAI8031899.1 | |
| CAI8031900.1 | |
| CAI8031901.1 | |
| CAI8031902.1 | DNA HELICASE-RELATED |
| CAI8031903.1 | |
| CAI8031905.1 | |
| CAI8031904.1 | |
| CAI8031906.1 | |
| CAI8031907.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8031908.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8031909.1 | HYDROLASE ALPHA/BETA FOLD FAMILY |
| CAI8031910.1 | |
| CAI8031911.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8031912.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8031914.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8031913.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8031915.1 | CHLORINASE MJ1651 |
| CAI8031916.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8031917.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI8031918.1 | |
| CAI8031919.1 | UNIVERSAL STRESS PROTEIN SLR1230 |
| CAI8031920.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
