Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032371.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8032372.1 | |
| CAI8032373.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8032374.1 | |
| CAI8032375.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8032376.1 | |
| CAI8032377.1 | L-CYSTEINE DESULFHYDRASE |
| CAI8032379.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8032378.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8032380.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8032381.1 | |
| CAI8032382.1 | |
| CAI8032383.1 | |
| CAI8032384.1 | - |
| CAI8032385.1 | |
| CAI8032386.1 | |
| CAI8032389.1 | UNCHARACTERIZED |
| CAI8032388.1 | |
| CAI8032392.1 | |
| CAI8032391.1 | UNCHARACTERIZED |
| CAI8032390.1 | |
| CAI8032393.1 | |
| CAI8032395.1 | |
| CAI8032394.1 | |
| CAI8032387.1 | |
| CAI8032398.1 | PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE |
| CAI8032399.1 | PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE |
| CAI8032397.1 | PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE |
| CAI8032396.1 | |
| CAI8032400.1 | |
| CAI8032401.1 | |
| CAI8032402.1 | |
| CAI8032404.1 | RRP15-LIKE PROTEIN |
| CAI8032403.1 | RRP15-LIKE PROTEIN |
| CAI8032405.1 | |
| CAI8032406.1 | |
| CAI8032407.1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
| CAI8032408.1 | |
| CAI8032409.1 | |
| CAI8032410.1 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 |
| CAI8032411.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8032413.1 | METHIONINE AMINOPEPTIDASE |
| CAI8032412.1 | METHIONINE AMINOPEPTIDASE |
| CAI8032414.1 | NUCLEOTIDE KINASE |
| CAI8032415.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8032417.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8032416.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8032418.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
| CAI8032428.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8032427.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
