Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032426.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8032425.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8032424.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8032423.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8032422.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8032421.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8032420.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8032419.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8032429.1 | |
| CAI8032430.1 | 40S RIBOSOMAL PROTEIN S15A |
| CAI8032433.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8032432.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8032431.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8032434.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L24 |
| CAI8032435.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI8032436.1 | |
| CAI8032437.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI8032438.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8032439.1 | CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED |
| CAI8032441.1 | RIBOSOMAL PROTEIN L2 |
| CAI8032440.1 | RIBOSOMAL PROTEIN L2 |
| CAI8032442.1 | RIBOSOMAL PROTEIN L23-RELATED |
| CAI8032447.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8032446.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8032445.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8032444.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8032443.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8032448.1 | |
| CAI8032449.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI8032450.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI8032451.1 | |
| CAI8032452.1 | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER |
| CAI8032453.1 | ELONGATION FACTOR TU-RELATED |
| CAI8032454.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8032455.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8032456.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8032457.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8032458.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8032459.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8032460.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8032466.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8032465.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8032464.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8032461.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8032462.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8032463.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8032467.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI8032470.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8032469.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8032468.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
