Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032721.1 | NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE |
| CAI8032722.1 | NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE |
| CAI8032723.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8032724.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 |
| CAI8032725.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8032727.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8032728.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8032726.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8032729.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8032730.1 | |
| CAI8032731.1 | |
| CAI8032733.1 | |
| CAI8032732.1 | PDZ AND LIM DOMAIN PROTEIN ZASP |
| CAI8032737.1 | |
| CAI8032734.1 | |
| CAI8032739.1 | |
| CAI8032738.1 | |
| CAI8032735.1 | |
| CAI8032736.1 | |
| CAI8032740.1 | |
| CAI8032741.1 | |
| CAI8032742.1 | |
| CAI8032743.1 | |
| CAI8032744.1 | |
| CAI8032745.1 | |
| CAI8032747.1 | |
| CAI8032746.1 | APOSPORY-ASSOCIATED PROTEIN C-RELATED |
| CAI8032748.1 | APOSPORY-ASSOCIATED PROTEIN C-RELATED |
| CAI8032749.1 | |
| CAI8032750.1 | UNCHARACTERIZED |
| CAI8032752.1 | |
| CAI8032751.1 | |
| CAI8032753.1 | |
| CAI8032757.1 | CYCLINS |
| CAI8032756.1 | CYCLINS |
| CAI8032755.1 | CYCLINS |
| CAI8032754.1 | CYCLINS |
| CAI8032758.1 | CYCLINS |
| CAI8032759.1 | MUTATED IN BLADDER CANCER 1 |
| CAI8032760.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8032761.1 | |
| CAI8032762.1 | |
| CAI8032763.1 | BETA-GALACTOSIDASE RELATED |
| CAI8032764.1 | BETA-GALACTOSIDASE RELATED |
| CAI8032766.1 | BETA-GALACTOSIDASE RELATED |
| CAI8032765.1 | BETA-GALACTOSIDASE RELATED |
| CAI8032767.1 | |
| CAI8032768.1 | |
| CAI8032769.1 | |
| CAI8032770.1 | HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR HRCA |
