Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032771.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8032772.1 | SLR1885 PROTEIN |
| CAI8032773.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8032774.1 | LEUCINE-RESPONSIVE REGULATORY PROTEIN |
| CAI8032775.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8032776.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8032777.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
| CAI8032778.1 | |
| CAI8032779.1 | |
| CAI8032780.1 | |
| CAI8032781.1 | |
| CAI8032784.1 | |
| CAI8032782.1 | |
| CAI8032783.1 | |
| CAI8032785.1 | |
| CAI8032788.1 | NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY |
| CAI8032786.1 | |
| CAI8032787.1 | |
| CAI8032789.1 | NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY |
| CAI8032790.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10-RELATED |
| CAI8032791.1 | |
| CAI8032792.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8032793.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8032794.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8032795.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8032796.1 | |
| CAI8032797.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8032798.1 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
| CAI8032801.1 | OS10G0105400 PROTEIN |
| CAI8032800.1 | OS10G0105400 PROTEIN |
| CAI8032799.1 | |
| CAI8032802.1 | OS10G0105400 PROTEIN |
| CAI8032803.1 | OS10G0105400 PROTEIN |
| CAI8032804.1 | OS10G0105400 PROTEIN |
| CAI8032805.1 | OS10G0105400 PROTEIN |
| CAI8032806.1 | |
| CAI8032808.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8032809.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8032807.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8032810.1 | |
| CAI8032811.1 | LD44762P |
| CAI8032812.1 | PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
| CAI8032814.1 | PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
| CAI8032813.1 | PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
| CAI8032815.1 | PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
| CAI8032816.1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| CAI8032817.1 | CADHERIN-87A |
| CAI8032820.1 | CWF19, CELL CYCLE CONTROL PROTEIN |
| CAI8032819.1 | CWF19, CELL CYCLE CONTROL PROTEIN |
| CAI8032818.1 | CWF19, CELL CYCLE CONTROL PROTEIN |
