Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033020.1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B |
| CAI8033022.1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B |
| CAI8033023.1 | |
| CAI8033024.1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| CAI8033026.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8033025.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8033027.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8033028.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8033029.1 | |
| CAI8033030.1 | |
| CAI8033031.1 | |
| CAI8033032.1 | REGULATORY P DOMAIN-CONTAINING PROTEIN |
| CAI8033034.1 | GENE, 17359-RELATED |
| CAI8033033.1 | GENE, 17359-RELATED |
| CAI8033035.1 | VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL |
| CAI8033036.1 | VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL |
| CAI8033037.1 | |
| CAI8033039.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8033040.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8033041.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8033038.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8033042.1 | |
| CAI8033043.1 | THO COMPLEX SUBUNIT 3 THO3 |
| CAI8033044.1 | THO COMPLEX SUBUNIT 3 THO3 |
| CAI8033045.1 | |
| CAI8033048.1 | GLUCOSE INHIBITED DIVISION PROTEIN A |
| CAI8033047.1 | GLUCOSE INHIBITED DIVISION PROTEIN A |
| CAI8033046.1 | GLUCOSE INHIBITED DIVISION PROTEIN A |
| CAI8033049.1 | GLUCOSE INHIBITED DIVISION PROTEIN A |
| CAI8033050.1 | RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B |
| CAI8033052.1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| CAI8033051.1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| CAI8033053.1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| CAI8033054.1 | |
| CAI8033055.1 | SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2 |
| CAI8033056.1 | ESOPHAGEAL CANCER ASSOCIATED PROTEIN |
| CAI8033057.1 | ESOPHAGEAL CANCER ASSOCIATED PROTEIN |
| CAI8033058.1 | ACTIVATING TRANSCRIPTION FACTOR ATF 4/5 |
| CAI8033060.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8033059.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8033061.1 | |
| CAI8033062.1 | |
| CAI8033063.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| CAI8033064.1 | KELCH PROTEIN |
| CAI8033065.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8033066.1 | |
| CAI8033067.1 | |
| CAI8033068.1 | |
| CAI8033069.1 | |
| CAI8033070.1 |
