Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033322.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8033321.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8033323.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI8033324.1 | RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG |
| CAI8033326.1 | RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG |
| CAI8033325.1 | RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG |
| CAI8033327.1 | ELONGATION FACTOR TU-RELATED |
| CAI8033328.1 | ELONGATION FACTOR TU-RELATED |
| CAI8033329.1 | SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 |
| CAI8033330.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8033331.1 | |
| CAI8033332.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8033333.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8033334.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8033335.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8033336.1 | 39S RIBOSOMAL PROTEIN L20 |
| CAI8033337.1 | 39S RIBOSOMAL PROTEIN L20 |
| CAI8033339.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8033338.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8033340.1 | |
| CAI8033341.1 | METALLOPROTEASE M41 FTSH |
| CAI8033342.1 | |
| CAI8033344.1 | |
| CAI8033343.1 | |
| CAI8033345.1 | |
| CAI8033347.1 | |
| CAI8033346.1 | |
| CAI8033350.1 | |
| CAI8033348.1 | |
| CAI8033351.1 | |
| CAI8033352.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033349.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033353.1 | GLYCOGEN SYNTHASE KINASE-3 ALPHA |
| CAI8033354.1 | GLYCOGEN SYNTHASE KINASE-3 ALPHA |
| CAI8033355.1 | |
| CAI8033357.1 | |
| CAI8033356.1 | |
| CAI8033358.1 | |
| CAI8033359.1 | |
| CAI8033360.1 | |
| CAI8033361.1 | |
| CAI8033362.1 | |
| CAI8033363.1 | |
| CAI8033365.1 | |
| CAI8033366.1 | |
| CAI8033364.1 | |
| CAI8033369.1 | |
| CAI8033368.1 | |
| CAI8033367.1 | |
| CAI8033371.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
