Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033471.1 | |
| CAI8033472.1 | |
| CAI8033473.1 | |
| CAI8033475.1 | |
| CAI8033474.1 | |
| CAI8033476.1 | SMAD |
| CAI8033477.1 | SMAD |
| CAI8033478.1 | DYMECLIN |
| CAI8033481.1 | DYMECLIN |
| CAI8033479.1 | DYMECLIN |
| CAI8033480.1 | DYMECLIN |
| CAI8033484.1 | DYMECLIN |
| CAI8033483.1 | DYMECLIN |
| CAI8033482.1 | DYMECLIN |
| CAI8033485.1 | |
| CAI8033486.1 | |
| CAI8033487.1 | |
| CAI8033488.1 | |
| CAI8033489.1 | |
| CAI8033495.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8033494.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8033493.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8033492.1 | |
| CAI8033491.1 | |
| CAI8033490.1 | |
| CAI8033496.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8033497.1 | |
| CAI8033498.1 | |
| CAI8033499.1 | AMINOTRANSFERASE |
| CAI8033501.1 | ZGC:162297 |
| CAI8033500.1 | ZGC:162297 |
| CAI8033502.1 | UVRABC SYSTEM PROTEIN A |
| CAI8033503.1 | TUDOR DOMAIN-CONTAINING PROTEIN |
| CAI8033504.1 | UNCHARACTERIZED |
| CAI8033505.1 | UNCHARACTERIZED |
| CAI8033506.1 | UNCHARACTERIZED |
| CAI8033508.1 | |
| CAI8033507.1 | |
| CAI8033509.1 | |
| CAI8033510.1 | LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD |
| CAI8033511.1 | BLL1576 PROTEIN |
| CAI8033512.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8033513.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8033514.1 | |
| CAI8033515.1 | ATP SYNTHASE GAMMA CHAIN |
| CAI8033518.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8033517.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8033516.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8033519.1 | ATP SYNTHASE DELTA CHAIN |
| CAI8033520.1 |
