Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033571.1 | GMP SYNTHASE-RELATED |
| CAI8033575.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8033573.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8033574.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8033572.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8033576.1 | |
| CAI8033577.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE CATALYTIC SUBUNIT |
| CAI8033578.1 | ADENYLOSUCCINATE LYASE |
| CAI8033579.1 | ADENYLOSUCCINATE LYASE |
| CAI8033580.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI8033581.1 | |
| CAI8033582.1 | |
| CAI8033583.1 | |
| CAI8033584.1 | QUINOL MONOOXYGENASE YGIN-RELATED |
| CAI8033585.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8033586.1 | SECRETED PROTEIN-RELATED |
| CAI8033587.1 | SEPTUM SITE-DETERMINING PROTEIN MIND HOMOLOG, CHLOROPLASTIC-RELATED |
| CAI8033588.1 | TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEX |
| CAI8033589.1 | RIBONUCLEASE P PROTEIN COMPONENT |
| CAI8033590.1 | RIBONUCLEASE P PROTEIN COMPONENT |
| CAI8033591.1 | MEMBRANE PROTEIN INSERTION EFFICIENCY FACTOR-RELATED |
| CAI8033592.1 | |
| CAI8033593.1 | |
| CAI8033594.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE |
| CAI8033595.1 | TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE |
| CAI8033596.1 | TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE |
| CAI8033597.1 | PORPHOBILINOGEN DEAMINASE |
| CAI8033600.1 | GLUTAMYL-TRNA REDUCTASE |
| CAI8033599.1 | GLUTAMYL-TRNA REDUCTASE |
| CAI8033598.1 | GLUTAMYL-TRNA REDUCTASE |
| CAI8033601.1 | DNA-BINDING PROTEIN HU |
| CAI8033602.1 | 30S RIBOSOMAL PROTEIN S1 |
| CAI8033603.1 | |
| CAI8033604.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8033605.1 | |
| CAI8033606.1 | |
| CAI8033607.1 | |
| CAI8033608.1 | LD44762P |
| CAI8033609.1 | |
| CAI8033610.1 | |
| CAI8033611.1 | HEDGEHOG-INTERACTING PROTEIN |
| CAI8033612.1 | |
| CAI8033613.1 | HEDGEHOG-INTERACTING PROTEIN |
| CAI8033616.1 | LD44762P |
| CAI8033617.1 | RAS-RELATED PROTEIN RAB |
| CAI8033615.1 | LD44762P |
| CAI8033614.1 | LD44762P |
| CAI8033618.1 | RAS-RELATED PROTEIN RAB |
| CAI8033620.1 | |
| CAI8033619.1 |
