About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8011851.1-
CAI8011852.1MITOCHONDRIAL RIBOSOMAL PROTEIN S5
CAI8011853.150S RIBOSOMAL PROTEIN L15
CAI8011854.1SECY/SEC61-ALPHA FAMILY MEMBER
CAI8011855.1NUCLEOTIDE KINASE
CAI8011856.1METHIONINE AMINOPEPTIDASE
CAI8011857.1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC
CAI8011858.130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18
CAI8011859.140S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11
CAI8011860.130S 40S RIBOSOMAL PROTEIN
CAI8011861.1-
CAI8011862.1RIBOSOMAL PROTEIN L17
CAI8011863.1PSEUDOURIDYLATE SYNTHASE
CAI8011864.1RIBOSOMAL PROTEIN S9
CAI8011865.1-
CAI8011866.1CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED
CAI8011867.1PROLINE-RICH ANTIGEN HOMOLOG-RELATED
CAI8011868.1S-ADENOSYLMETHIONINE SYNTHETASE
CAI8011869.1ADENOSYLHOMOCYSTEINASE
CAI8011870.1FAD-DEPENDENT OXIDOREDUCTASE
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